Protein Info for CA265_RS09345 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 221 to 242 (22 residues), see Phobius details amino acids 261 to 281 (21 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 374 to 394 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 16 to 165 (150 residues), 37.3 bits, see alignment E=1.7e-13 PF07690: MFS_1" amino acids 20 to 349 (330 residues), 101.3 bits, see alignment E=5.5e-33

Best Hits

KEGG orthology group: None (inferred from 65% identity to shg:Sph21_3350)

Predicted SEED Role

"Major facilitator superfamily (MFS) transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z474 at UniProt or InterPro

Protein Sequence (410 amino acids)

>CA265_RS09345 MFS transporter (Pedobacter sp. GW460-11-11-14-LB5)
MDLQAKAHNRNVIFLVIVAALGYFVDIYDLVLFSVVRVQSLTEIGVSQADMQSDGFLIIN
SQMFGLLLGGILWGVLGDKLGRIKVLFGSILLYSLANIANGFVTSVNSYAIIRFIAGIGL
AGELGAGITLVAETMDKEKRGYGTMIVGAVGLLGAAVAATVAAEFTWQTSYFVGGGMGLV
LLLLRVGTFESGMFKHAANQTEVSKGNIFMLFNNWKRFSKYLYCILIGIPLWFVVGILVT
LAPEFGKALGATEPLKAGTGIMFTYFGIAIGDVVTGLLSQVLKSRKKTVFIFHLLSVASV
VVYLTSFGLTSSNFIWICLFMGFSVGYWATFVTIASEQFGTNIRATVTTTAPNFVRGALI
PITFLFEFLTHKYGLITAGYLVMGILTLIAMFGLSQLKESFNKDLDYLED