Protein Info for CA265_RS09110 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 37 to 55 (19 residues), see Phobius details amino acids 61 to 79 (19 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details PF11750: DUF3307" amino acids 5 to 123 (119 residues), 100.7 bits, see alignment E=3.1e-33

Best Hits

KEGG orthology group: None (inferred from 45% identity to mtt:Ftrac_1036)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z3V9 at UniProt or InterPro

Protein Sequence (236 amino acids)

>CA265_RS09110 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MDIYLIKLILVHLIGDFFLQPNAWVKDKESKKLRSIKLYLHVVIHIALIFLIFLNFGVWK
VALSIGLLHFVIDALKLVLQTKKNARILFFVDQVLHFTSIVVVWHFFYKGSLNISFFNET
RTWILIAGALFLTMPTSIVMRVIIAKWLPDNQPDSPQSLQNAGKYIGILERVLIFLFILT
NHFEAVGFLLAAKSIFRFGDLKEAHDLKLTEYVLIGTLLSFGIAIVTAMLIQMFMA