Protein Info for CA265_RS08795 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 687 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF07715: Plug" amino acids 45 to 150 (106 residues), 76 bits, see alignment E=3.3e-25 PF00593: TonB_dep_Rec" amino acids 248 to 644 (397 residues), 99.4 bits, see alignment E=4.7e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z3Q1 at UniProt or InterPro

Protein Sequence (687 amino acids)

>CA265_RS08795 TonB-dependent receptor (Pedobacter sp. GW460-11-11-14-LB5)
MKIYLSIALSLCGFVTVAQEIKVDTTKANDLKDVVITGQYGPQTLRNSVYNVKTISAARI
KLRAATNVQQVLNTELGFRFSNDLTLGTTDVSLMGMTGRNIKILLDGVPMVDRSDARESL
NQIDINTIERVEIVEGPMSVVYGTDALAGVINIITKNPGKQLLSVNARVQEETAGNEYNL
LNGAGQHNQNLSVSWQKKGWSVLLGASHNEFGGWNLASKTATIAEVNSILSRWKPKEQFL
GNTKIGYRNNNFNIWYRLDGLKEDIFVRNGLNPNNYKGILQTYTTHRYAQQLQSEYKFSN
KLQLSAIAGFTKLDRATRTVIHDFSNNTEELSPGLGEQDVAKFNSTIFRATAIYILNQFV
SFQPGIEYNRDAASGQRISGSPVINDYAAFLSAEIKLSAGINIRPGLRFIKNSVYDAPPV
IPSLNTKFTLTKDLDFRLAYARGFRSPALRELFYDFVDASHTIFGNPNLKAEESNSFNAS
LAWAGIQGKDFQFRSTLSGFYNLFKNRIEFGISPANTSITTPINVSKYKTTGGTLENILI
FKNLQATLGLSYIGRYNDLLEDKDITAPEFAWATEVNSNITYTFPNVNGSISFFYKYTGS
LPSYQLATNNTAVLVKIGDFHTADLMLNKNLFKSLDINAGIKNLFNVTQLTNSSTANAGA
HSTGGAAVAYSYGRSYVLGLSYNWYKL