Protein Info for CA265_RS08580 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1140 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF17132: Glyco_hydro_106" amino acids 26 to 696 (671 residues), 488.1 bits, see alignment E=2.8e-150 amino acids 731 to 936 (206 residues), 94.6 bits, see alignment E=3e-31

Best Hits

KEGG orthology group: None (inferred from 66% identity to phe:Phep_2749)

Predicted SEED Role

"glycoside hydrolase family 2, sugar binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z3F7 at UniProt or InterPro

Protein Sequence (1140 amino acids)

>CA265_RS08580 DNA-binding protein (Pedobacter sp. GW460-11-11-14-LB5)
MINFRYIQVLCIILIILNFSVNVFAQPNENAKPWVFWYWMHGGVSKAGITADLEAMKSSG
IGGAYLMPIYGTNKPDVYPQPVVQLTPQWWQMVEFAMSEAKRLNLKLGMHVSDGFALAGG
PWITPELSMQKLVWSKLNIKHTAAKINLTQPKYNENYYKDIAVFAYPSPTNAGISTRTVI
PKITTSNGVDASGLIKPENTKNFGSNEPCYIQYEFEQPFTCRSITIKINGNNYQAHRLAI
EVSNDGQVFRSIGRLTPPRHGWQDTDESVTHAIVPATAKFFRFIYDKSGAEPGSEDLDAA
KWKPSLKLVNLELSSEAQINQFEGKNGSVWRVSERSTEAQIAKNLCIPLNKMINLTGKLN
PDGSLNWKAPKGNWTILRIGHTSTGHTNATGGGGTGLECDKFNPEAVKLQFESWYGEALK
HGGPEIAQKVLSVFHVDSWECGSQNWSPVFKAEFLKRRGYDLTPYLPIMTGLPVESAAVS
ENFLYDIRKTISELVVDQFYKTLAQLAKKKGLTFTAESVAPTMMSDGLMHYKMVDVPMGE
FWLNSPTHDKPNDMLDAISSAHIYGKNIVQAEAFTTLRMDWNESPASMKTLQDRNYALGI
NKMVYHVFVHNPWMDKKPGMTLNGIGLYFQRDQTWWKPGKAWVDYAERTQNLLQQGKPVV
DIAVFTGEELPRRSVLPDRLVETLPGIFGSDVVEAEKKRLANVGEPLRQIPAGVTHSANM
ADPENWVNPLRGYAYDSFNPDVLSTATVKDGQVVFESGASYKVLVIPGKMKMNPNDQYMS
YATVKKIFELIIAGANVIVADKPLYQNGLQHVSQSAFSSAVDEIWKNNFHEINNNNHSVL
MKIMDKGNLFKAPFNTDNFKLLGIEPDFYVTEANSNSEPITYAKKVAYTHRKTDKKDIYF
ISNQEAKERNLWFSFRVTNKIPQVYDAVADKLTDVNNWSSERGRTGFTYKIAPNQSLFFL
FEKETTKTKLNNGNNWSTFKTIQDISKSWQVKFDTAYAGPSKPVIFNDLSDWTLNTDSLV
KYYSGTAVYTKNFTFNGDLKGKIWIDLGEFSSIAEVKVNGINCGTLWTAPHRLEISKALK
KGENQITIEVTNTWANRLIGDQHIPENKRMTNTNAPFRLEGKPLNPAGLLGPVVIQVEEL