Protein Info for CA265_RS08425 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1084 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 28 to 1083 (1056 residues), 730.9 bits, see alignment E=1.6e-223 PF13620: CarboxypepD_reg" amino acids 30 to 100 (71 residues), 44.1 bits, see alignment 3.4e-15 PF13715: CarbopepD_reg_2" amino acids 30 to 112 (83 residues), 59.8 bits, see alignment 3.3e-20 PF07715: Plug" amino acids 120 to 231 (112 residues), 36.6 bits, see alignment E=8.5e-13

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z436 at UniProt or InterPro

Protein Sequence (1084 amino acids)

>CA265_RS08425 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MNLKFLRKISLSLLMILLASTILFAQDRKITGKVVDQADGQGIPGVNVSLKGVPSNVSTN
SDGVYTIQVKSNSDVLVFSYIGYARQTIPVGTQTTINVKLVSDNQNLEEVVVVGYGTQKK
VTLTGSVSTADIKKVEDVPALTLSAALRGTAPNLNISGGTQRPGQGTTITIRNPVAFAKD
GGQGTNPIFVIDDVIRTQADFDLLDQNVVESVSVLKDAEAAIFGVSGANGVIIVRTKRGK
TGAPKINFSSSVGFSDATKLPDMMSGLQLGNFVNDYLDASVYQQVTAGVVRQNTYINPAD
GFKVVDGVTTTKEPLWYTPDELEYFGNHNNNWLKNAFQTSNMYRQALNISGGTDKVTYFV
GGDYITQNSNFKGVNSSKYGLRASIDAKLGKGLTVSASISTDVNQSKSYFYKLNSTSESL
DNDVATLQNVNPWSEYFIDGNPVLLGANAGGGLENVNFFLIQNTDNFTSSKAYVMNMLGK
ITYQIPGVKGLTATFTANKNINASNGKQFGTTFNYYKYAGLGLNSHIPGGALLSVSSIKN
GDRIRLNPVFSESYQLNGGFTYDRTFGKHSISATALLEQRESNQEGVSAMVEGLVTGALP
YQTFAVGTQSSNQVGLVNQFGFQSIISRINYDYDNKYLLQLVYRRDGSSRFAPGRNWGGF
PAASAGWVASQEKFFKDHVKFMDLLKFRVSVGLTGTDNTKPYQYLASYNVGTGNNGGAVF
NNGDRTIGVKTNIAIPNEMVVWDHSLKTNYGVDMAFLNNRLTATAEYFWSHNYDMLTTLS
SSVPAVIGAAVPTENFGIVNTFGYELSLTWKDKIGENFSYSFSPFYTWNDNKYIRYDLAS
GKIGTLEDLTGQSNDPGYFGYKSLGIIRTQDEANAIIAQRINGSAVGNDAKKVKILDNVL
QPGMINYEDVNGDGVISVADKQYITNRQTNHNYLGLNFNVGYKGLSLNVVGGLSWGGYTS
IGGLKPSGTSPSIYGNRASYWADHWTKTNTNAAYPNPYFTSAFEESDFWLVSATQLGITN
ANLSYSIPATLTQKVGINSIRVFAQATNPVQFINPFPDNYRDFLSPVGTYPTLRTISFGI
NVGL