Protein Info for CA265_RS08275 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1101 transmembrane" amino acids 543 to 564 (22 residues), see Phobius details PF20703: nSTAND1" amino acids 6 to 255 (250 residues), 75.5 bits, see alignment E=6.4e-25 PF01637: ATPase_2" amino acids 20 to 177 (158 residues), 37.6 bits, see alignment E=2.3e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z358 at UniProt or InterPro

Protein Sequence (1101 amino acids)

>CA265_RS08275 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKRDRFPGLRSFEQEDAAIFFGRDAEINQLAKLIMVNRVNVLFGPSGVGKSSLLNTVFIK
ERELSHFLPIRIRLNQNYLNQDDVENEEEELLNPAETLYKSIEVKLKQLDIIYRKEDIIY
DGDQPKIWEYIKLAECKLKEKNPNCDIVLIFDQFEEFFSYSNDVETDFINQLAEITHELS
PKRILDWIGNLSDTDRIPVIEWYKQPSIRILFAIRSDKLSLMDRMDSSIPNILSNRFQIN
FFDSKNAKLAINGPALLPYKNELLLLDEAEISKNILDLNWQQNYTLPQSELYFNSFYSPP
IIISQKITELIISELTNKFDEIHASFLQIVCYYIEQKVKSLNIKNLHIPFFFSESEFLHE
INIANILDQFYIDQLSKIGNIRKQEMARRVIEDDLISDGKRASLLESQLINKLGGDRSLI
DRLLSARIIRSENTPRGVTFELSHDKLVEPIETSKKIRLQKEQLDQETKERDDLLAKEAN
ERENEIARQKELLKITSALKDKAENQRLIAIEERKRAEAATELAQRSEQLAIVAKIKAEK
RRIIANTLLLICIALFAFSLYSLIKLYKKVNKELLTQAENDYAQNNHYNAFQNWEKYLNN
RYLVNRKDSIETLLSDKFFFDISGGDNIQQFQQNSFLVHQSSGSFFVWEFDPSFSKLKAF
KFEDKKGNPQAAANTLVSPDKRYIAFRNIKDSIIYVYDKTNKDISKINGSQIDFVVKQGN
KKLSNITDFKMDFLSNTRFISFINSDGNLSLFDLALHKTLPLEIIKRKETFSSRDLKKIC
MVSGDNKMMALKRPANDTLKLYQLNGFKRPVKSATFGSVENVFSIADRNKLLIRFKNKTL
AIMSYQGKNYETILSDVTDIIVSPDGSKALILRGNKDLFVYDLVHKSRIESKKLLRRFWE
GEKTIRLNDIVRWIGNTNKFSFRNRKGIVFVIDLADVSSHFLCDGVKSQNTLKTSENFNY
VFSNDGSRGMYLNKNGVLKVIDINTSTIIYSEAVSKNSDLIFSLSYNLENIIALSDDGKN
VAIIKNFDTNQNELIILNLENKNILYRSTSVKYIGKFFTNKFIHLIYDNNNAGGIIFFHN
QKERNIQYYSNLYPTKLEPIQ