Protein Info for CA265_RS08145 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF02424: ApbE" amino acids 37 to 313 (277 residues), 207.2 bits, see alignment E=5.1e-65 PF10029: DUF2271" amino acids 366 to 496 (131 residues), 125 bits, see alignment E=2.7e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z312 at UniProt or InterPro

Protein Sequence (510 amino acids)

>CA265_RS08145 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKFKHLTAAFLLVISASAFVSPKKALRTFVSNYENVLGTSLELKFKTVSQADADLAEACA
LNEIDRLDDILSAYKANSEFSRWMNNGKQTTKVSTDLFEVLKQFENYKVLTNGALDASAK
VIGDVWKKAAAEGRLPSATTLQNAVALVKQKHYVLNEQDKTVTRLDDVPLALNSFAKSYI
INKAAEKAVQSPGIENVVVNIGGDMVIKGNQPEAIEIANPKADAENDVALTTIKVSNKAV
ATSGNYRRGFNVNGKWYSHIVDPRTGNPVSEIISATVIASDASEAGALATSFNVLSLAEI
KAMTATRNDIAYLLITKEGKEIKSKEWANYEFALNKPAAVLEKVNKADKLWNTKYELVVN
LEIANIESTDGKRVRRPFVAVWIEDAAKTPVRNLAIWYNKPRWLPDLKSWNRANGEEFKK
GAEGKLSSTSSATRGPGKYSLSWDGKDDNGKLVKAGTYTVFIEVAREHGTYQVIAQEMKF
TGTAKKIELTPNTELTSASLDYRKIGTAKK