Protein Info for CA265_RS08120 in Pedobacter sp. GW460-11-11-14-LB5
Annotation: copper homeostasis protein CutC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 49% identical to CUTC_CHRVO: Copper homeostasis protein CutC (cutC) from Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
KEGG orthology group: K06201, copper homeostasis protein (inferred from 52% identity to cpi:Cpin_6564)Predicted SEED Role
"Cytoplasmic copper homeostasis protein cutC" in subsystem Copper homeostasis: copper tolerance
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1X9Z2Z6 at UniProt or InterPro
Protein Sequence (249 amino acids)
>CA265_RS08120 copper homeostasis protein CutC (Pedobacter sp. GW460-11-11-14-LB5) MATGCLEVCANSYQSAVAAQNGGAKRVEFCDNLAEGGTTPSYAQISLAKKNLSIEVWPII RPRGGDFLYSEIEFELMKEDIKICKSLNCEGIVTGILKADGTIDKERCAELIELAKPMEV AFHRAFDMSNDMDQALEDLIELNIKRVLTSGGASSAILGAEKLAQLVKKANGRIIIMPGA GINENNIKNLIDQTGATQFHASAKEFVPSKMEFRNTETKMGSIEDEYRYELTSEIKVKAL IDCINEAVS