Protein Info for CA265_RS07510 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 291 to 314 (24 residues), see Phobius details amino acids 334 to 366 (33 residues), see Phobius details amino acids 374 to 399 (26 residues), see Phobius details PF12704: MacB_PCD" amino acids 25 to 253 (229 residues), 132.2 bits, see alignment E=3.2e-42 PF02687: FtsX" amino acids 295 to 408 (114 residues), 56.2 bits, see alignment E=3.5e-19

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 73% identity to phe:Phep_2570)

Predicted SEED Role

"ABC transporter efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z2S9 at UniProt or InterPro

Protein Sequence (414 amino acids)

>CA265_RS07510 ABC transporter (Pedobacter sp. GW460-11-11-14-LB5)
MIIFRLIGESFRFAFDALRQNKLRTMLSLLAITIGIFTIIAVFSAVDTFRGKLQASVDKL
GSNTIYIQKWPWSFGDNYPWWKYMNRPQPSLRDFEALRERIEHAQGVTFEISTNDRTIKY
RSNSVEGISVWAASHDFNKTWNFELQDGRYFTENESKNGTPVCILGSDIADGLFDGDAPV
GKQVQILGRRLTVVGVFKKEGEDMLGTSLDKNVNIPIAFAKGVLDIQNERYGPQITVRGK
DNVSLEEVESELKGLMRSIHRIRPGQEEDFALNKTTIISNQLDSMFKMVNIAGWVIGGFS
ILVGGFSIANIMFVSVKERTNIIGIQKSLGAKNYFILLQFIFESISLCILGGLLGLLLVF
LLALGIGAATDFHIILGLNNIALGIGISIIIGTISGFWPAYSASRLDPVEAIRS