Protein Info for CA265_RS07275 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 PF13458: Peripla_BP_6" amino acids 4 to 297 (294 residues), 67.1 bits, see alignment E=1.2e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z399 at UniProt or InterPro

Protein Sequence (384 amino acids)

>CA265_RS07275 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MNKPLKIGFLMPYSGVYPFYAQHITAGFLCAASKMSYGIADFAFMPTYVGQGGNKAFLEA
AQKLVFFDGVDVLMGMISPKIYPELKPILENHNKLGLFFDFGESVPASEGYGTNISSLSM
GLWQSEYVLGQWATKEFGPRGLMISPLYESGFNLGASFLSGVGSAGADQLRSTVLPENQA
NKNNLDLSHFFNEIDVNTPDYVHAIFVGQIGNEFLKQWKSSKFNNVIPLVTVENMAYPDM
LEDIGHLGLNFYSASSWSKEHKTGTNPAFVRDFENFGKQQANLFGMLGYEAGLMLSRMKA
QLTIGNASTAVIEFNQSGTIGPRGLLHFGSQEQQSFPLIDIVKINTTNKKNNATIISQGT
ALGYDISTVYSETESGWENPYLSV