Protein Info for CA265_RS07060 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 PF00004: AAA" amino acids 246 to 370 (125 residues), 92.7 bits, see alignment E=1.3e-30

Best Hits

KEGG orthology group: None (inferred from 48% identity to geo:Geob_3743)

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCJ9 at UniProt or InterPro

Protein Sequence (450 amino acids)

>CA265_RS07060 AAA family ATPase (Pedobacter sp. GW460-11-11-14-LB5)
MVNNNLQANADALLAELNWFEKVLQLRSAINAGNVAAGTRIFDAHPPDLSNFDSSYARFL
AKYQFKFAERFLLFLSMVSQIKPQCLDIFLVNNPQTGQIFTEFGGKKGNVFSGFLPTAET
FLFLLASDNLMLRFDLMKLFDARNPLFALNVLEYEPLPPGEPISSIPLHISKNWFEEFTT
GERSKPRFSTDFPAHLIETNMEYGDLVLPEHTREHLELLNAWLQHSPTMMNDLGLKHKIK
PGFRTLFYGQPGTGKSLAAAVLGKKHNLPVYRIDLSRIVSKYIGETGKNLAKVFDAAENQ
GWILFFDEADALFGKRTNVSDARDKYANQETSYLLQRIEDHNGLVILASNFKQNIDQAFL
RRFQSVIEFPMPEASQRALLWEQGFSPFTKMEAKINLDEIAQKFELTGGVIINVVQYATM
QMLKEGGKEIRQKDIIEGVKRELKKSGRTL