Protein Info for CA265_RS07050 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1220 transmembrane" amino acids 682 to 697 (16 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z335 at UniProt or InterPro

Protein Sequence (1220 amino acids)

>CA265_RS07050 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MELINKTTVFEENQVLTAGQLNNTQQFLFQESRLTRIRLIGRGIVCGLHASYGENTVHIS
KGLGVTSWGFLISLGDCDLTHYKPYTLPDGLDYKYFNNAPLLELVTAENAAAMGAGPITG
ALVLSDYVVVLFLESAARDLKSCLGKSCDDLGKENTFTIRKLLIKRTDLININTSNKNKG
GAMYPALYELETIDYPRALITPIAAANYPALVNTYLSPVAAILEKLTKQLAIIYSELPAL
TRHFPNYDFDSIRATWEAKLIELSAQYLSGKAYGFQYVYDAFEDIIKSYEELRCIAMHLN
SVCLPDEDAFPMHLMLGSDTCPPSVFRQEFEYSPLFNEYKDWSKKLVTVFGRTLNMLTGF
YDSQNEKNDRGILATPSKEKWQNIGKRALPIYFDRGIADFETYWNESLCHGCDNGKPLSY
HYQLPLNLQTYGKSKLEAPLLYNFSDTTFFRMEGHLAIEEDVAVKQYERLQRNLNLPFKV
RSIFMGEGGTTKNICRYPDLDSQYLVWRNVMLYYLNNLIKYSTLAEKMIARFDDVKDAAK
DAVVGVNTKKETRFNAKAGGNETFNDTNGQTEKTSTFGNINNVFIKAGMVNERINQANYS
RINNSKGRLEETPNDLQRDALNMVAQFNDNIEELIATLTLEFSDFDENRFKSVYTGLISL
YVKGMKLMVKIINNEGNVELMAYLMAATIVHRALNVFMIRPYINIGTLTDIRSQRNKSLG
TNISFYDYIRRAGAVEHLAGVNKGNTLLLLYHTGREIEYQTIGKAPVAVPVTHKETEIAE
ITKAEKTVKANYETRSAEIKTRIEEHENELGQVKIQYKEALAGRIEEINKRKVFTADEIK
KEELAIKSELENKIRSLKSTGEDAVKTEALEKEYKERIVLLRKNTEADKTKELKELTGTM
ESELAEKLKVSEEVIEKARKEEAEALKEYEGHLKVLTEKRKAVEKGREKELEEIIVTGKR
KRGDYLSKFEASFNEQYDKLVEEIGREGLPNIADNVIADFTLYEDDGCCECDAKDYRNKE
LTPLVAPISRFVVYTPSRINTAKIQVLNNLYHPGDYKVIVKNGPNLGSVKFEEEVYEPKP
NLNKQILVYTLDPEKVAKDSRARRSVVAVDELEYAVIESETGNEVGTALITFFIGVGRIG
QDTYELSGNVAYAKQFKITITDAAGAPIQQGEFTGNKYSFNLNPGKYHIVMEGIAPQGRQ
ERDTEIVDEDVVENFDLGKK