Protein Info for CA265_RS07005 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 PF04984: Phage_sheath_1" amino acids 276 to 367 (92 residues), 37.2 bits, see alignment E=2.7e-13 PF17482: Phage_sheath_1C" amino acids 371 to 475 (105 residues), 51.8 bits, see alignment E=7.5e-18

Best Hits

Predicted SEED Role

"Phage tail sheath protein FI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z3A5 at UniProt or InterPro

Protein Sequence (481 amino acids)

>CA265_RS07005 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MATNYKTPGVYIEEISKLPASIAAVETAIPAFIGRTEFAKDENGNDVLPAAPTKLPTPIR
ITSFLDYQKYFGGANSETTVFETSGIPTITDTEVDGKIVKRVISCDAKKSETSGKYMYYA
IQMFYANGGGACYIVSSGSYSTDLTTDAAKAGLDAIAKVDEPTMLVFTDKHKLLNSTKSG
YKDVYDYALMQCAKLQDRIAIFDAWVLSDSPYADAGIVRNDIGTANLKYGAAYYPWLQST
LSYAYNEQVKVKHQVNAGNGPYNDLTLADIKALDLSTYRALVNEMDKNVIDLPPSGAVAG
IMARVDNNRGVWKAPANESVNLVTGPSLKVTAQQQETLNIDPTTGKSINVIRFFTGKGTL
VWGARTLAGNDNEWRYISVRRFYNFVEESVKKATEFVVFEPNDANTWLRVKTMCENFLNQ
LWRQGALQGAKPDDAYFVRIGLGVTMTSLDILEGRMNVEIGMAAVRPAEFIILKFSHKLQ
E