Protein Info for CA265_RS06880 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 16 to 475 (460 residues), 255.4 bits, see alignment E=5.2e-80 PF02321: OEP" amino acids 65 to 264 (200 residues), 79 bits, see alignment E=2.1e-26 amino acids 290 to 473 (184 residues), 77.3 bits, see alignment E=6.7e-26

Best Hits

KEGG orthology group: None (inferred from 70% identity to cpi:Cpin_5361)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z318 at UniProt or InterPro

Protein Sequence (477 amino acids)

>CA265_RS06880 RND transporter (Pedobacter sp. GW460-11-11-14-LB5)
MFKNNIYKGLGLVLICAAYTACRLPEVAQRTENKNVPVAFGSAQDTVSTASIQWRKFFTD
PNLVNLIDTALKNNQELNITLQDIEIAKNEIKAKKGELLPSVNYRVGAGLDKVGRYTSSG
AGDASTEITPGKEVPEILPDYTFGLQANWEADIWHKLRNAKKGAISHYLATVEGKNFVVT
NLIAEVANSYYELLAADNQLETVKKNIELQKNALELMKIQKEASRVNELAVRKFEAEVLS
SKSLEFDIQQNITETENKINFLLGRFPQLIIRDKSSFTDLVPPTVQTGLPSQLLANRPDI
KQAELELAAAKLDVKVAKAQFYPSLGISATIGYQAFNPSYLLRTPESLIYSLAGDLAGPL
INRNAIKAEYLTANAKQLQAVYDYEKTILNGYIEVANQMSKISNLQKSYDLKSKQVTALT
QSIDISNDLFKSARADYFEVLMTQRDALQSKLELIETKKQQLNAVVDIYHALGGGWN