Protein Info for CA265_RS06580 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 278 to 295 (18 residues), see Phobius details amino acids 392 to 411 (20 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details amino acids 454 to 475 (22 residues), see Phobius details amino acids 486 to 508 (23 residues), see Phobius details amino acids 521 to 543 (23 residues), see Phobius details TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 8 to 319 (312 residues), 182.4 bits, see alignment E=8.6e-58 PF07690: MFS_1" amino acids 25 to 299 (275 residues), 65.7 bits, see alignment E=3.6e-22 PF00854: PTR2" amino acids 82 to 314 (233 residues), 114.1 bits, see alignment E=7.4e-37 amino acids 387 to 515 (129 residues), 71.1 bits, see alignment E=8.7e-24

Best Hits

Predicted SEED Role

"Di-/tripeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z2A5 at UniProt or InterPro

Protein Sequence (553 amino acids)

>CA265_RS06580 MFS transporter (Pedobacter sp. GW460-11-11-14-LB5)
MPTTNQTKHPKGLKFLFLSEMWERFGYYLMIGIFTLYLKDVKTGFAMTEAESADLYGTFI
ALVFLTPFLGGLIADRYLGYAKSIIIGGIMMGVGYCLMGVHNLPMLYLAMTLVIFGNGFF
KPNISTLLGNIYSTPEYVAKKDDGYNIFYMGINVGAFICNFFGAALYIMLGWEYAFFAAG
VGMFIGVAVFIIGLKHYRSFDVKKGIMDGDMSFLKICLLILLPSVVAGVIGWIVPTKLIG
HPLVGSTSTDAFIFACFPVIYFYSTLFFKASKEEKRPIAALLTIFVVVILFWAVFKQNGT
ALTTWADRYTDRSLTNTTAKNTFSKFSLSQNITYKKDSVALYDNAFRLQKVDGVVQKEYN
YPTYFKNVPAAELPQEGGTVELWATNLSQSINPAWVILLTPLIVSFFTWLRRRGKEPSTA
TKIIFGIFISAISVLVMVTAVYIGKNGAEKVSVLWLMGTYGVITIGELFLSPMGLSLVSK
LSPVRITSLMMGGWFVSTSIGNKLSGVLATLWDTYEDKSNFFWVNFSLLMGSAIIGFALL
KWLNNIMKEYGIK