Protein Info for CA265_RS05470 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1037 signal peptide" amino acids 1 to 56 (56 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 64 to 131 (68 residues), 44.3 bits, see alignment 2.8e-15 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 64 to 1037 (974 residues), 866.6 bits, see alignment E=3.2e-264 PF13715: CarbopepD_reg_2" amino acids 65 to 147 (83 residues), 61.2 bits, see alignment E=1.1e-20 PF07715: Plug" amino acids 155 to 277 (123 residues), 58 bits, see alignment E=1.9e-19 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 253 to 283 (31 residues), 69.9 bits, see alignment (E = 1.1e-23)

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z1N2 at UniProt or InterPro

Protein Sequence (1037 amino acids)

>CA265_RS05470 SusC/RagA family protein (Pedobacter sp. GW460-11-11-14-LB5)
MQNFYEVRARRTLTSKFPTQYFRKLFSVSFIGRKKITFSFLILFLLLVLSKNGHAQTTPL
INSTLTGTVRDARTGETLPGVNVGINGTTHTALTDNNGIFRFVTGQKFPYTLTISFVGYK
TLQVVANGSPLEVKLEEQVNTLNNVVVVGYGTQKKSDFTGSLSSVPTELKGVPVASPDRL
IQGAISGAQVTQSSGQPGGGVSIRVRGGTSINAGNEPLYVIDGFPVYNGDASVDAGITNG
PAINPLSAINPADIESIDVLKDASATAIYGSRGANGVILITTKRGSKNSFSINYSGYYGT
QKVSKNIGVLNAREWGALKNDALTDAGKAPFYTQAQLDQLGEGTDWQSEAFRTAPVQNHS
LSISSGNEKTRLLLSGNYFKQEGVILNTGFDRYSAKLNIDHEVNAKFKLGAYLNGSITHA
DVAPSGIVANILSMVPVVPVKDANGNFTANSSFGATVANPIATLSLQTNETKTTRFLANS
FGEYTIIDGLTARVSLGADIINNKQNRYLPSALYESLPGGNASIGALSTLNWLNENTINY
KKTVNGKHSFDILLGNTQQKSVTEVFTAGTSNFVSDAFKYNNLASGTVLATPTSLKTEWA
LQSFLARINYAYDNKYLLTLTARADGSSRFGINNKWGTFPSAAIAWNASNEGFLQGIKAI
SSLKFRFSAGVTGNQEIDPYRSLSRLSSYQYTFANTLVNGLAIASFANPDLTWEKTAQYN
FGIDLELFSGRIQLTTDVYYKRTSDLLLEVPVPYSSSLTSAFQNLGVVRNKGVELGLKTI
NFQGDFNWTTNLIFSANRNKIITLGGAPYFFVTDPASPTTLPTQIIKVGESVGAFYMYET
DGVNPATGLQKYKDLNGDGAITQDADRKIVGSSQPKFLASITNTFRCKNFDLSVFFNASY
GNKIFNWTRANLELGTGYTGAVATLLDRWTPTNRNTDVHKAIENPAVTISDRFVEDGAFI
RLKNVSIGYSIPGRLLSKLKLSALRVYVSGSNLYTWTKYTGYDPEVSTNGQNSISTGMDR
AAYPNAKSIQGGISLTL