Protein Info for CA265_RS05185 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 41 to 60 (20 residues), see Phobius details PF03544: TonB_C" amino acids 203 to 280 (78 residues), 73.4 bits, see alignment E=8.3e-25 TIGR01352: TonB family C-terminal domain" amino acids 205 to 279 (75 residues), 42.1 bits, see alignment E=4.4e-15

Best Hits

Predicted SEED Role

"Ferric siderophore transport system, periplasmic binding protein TonB" in subsystem Campylobacter Iron Metabolism or Hemin transport system or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z278 at UniProt or InterPro

Protein Sequence (282 amino acids)

>CA265_RS05185 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MFNSSINVYKTEWLDLVFANRNKNYGAYDLRSKSSSIMTRALFVSGSLFILLCFSPLIYA
KLFPKEEVTVEIARPVDLTDVIHQMKPKTPEPEKKIEPAKADPVKVKTIALPSQVVVVNK
VDLPDPPTIKEIQDAVISDKTQDGVVAPNAVLTDNKGNGDGSGVAKDGAGTGDPNAVIDL
GGVDEYPEFNGGAKAWSKYMERNLRYPYQAQEENVQGKVFVSFVVEKDGSVTDVKVLRGL
GFGCDEEAIKVIKKSPLWKPGKNRGVPVRVKYNMAINFTISN