Protein Info for CA265_RS05160 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1118 transmembrane" amino acids 37 to 55 (19 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 63 to 143 (81 residues), 67.7 bits, see alignment 1e-22 PF13715: CarbopepD_reg_2" amino acids 64 to 155 (92 residues), 44.6 bits, see alignment E=1.2e-15

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z1K4 at UniProt or InterPro

Protein Sequence (1118 amino acids)

>CA265_RS05160 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MLKCVKFYWVHLQHNIPIRFIIQQQKTFKKQSMKKSLLLRLVLVIVAFVGITYGANAQVT
TSSITGTIKDAKGALPGASVKATHTPSGSVYTASTNNDGRYTIANARVGGPYTIEISFVG
YKPEKLTDVYLKLGDATVLNIVLNDNSQLLSDVVVRGTASASKSKTGMATAISRKQIEEL
PAISRSITDLTRLTPQSSSAGNGFSFAGRNALFNSLTLDGAQMNNVFGLSSLPGGQTNAQ
PFTLDALEELQINLAPYDVKQSGFTGAGVNAVTKSGTNKFSGSIYSYYKNQNLQGYKVGD
TQLPKSSGDAFSNKQLGFRLGGPIVKNKLFFFVNGEISRRTAPSSTLQVNRGTTGANISR
VTYNDMLTVKDLVQSKFGYDAGDIDGYSNLTEANNLTARLDWNISNSQRLTVRYNYLNSF
DDKAPSGSGSRNGRGPSLQSMIFSNLRYKQYNNLNSVTAELNSRFGNKFANNLQLIYSSF
RDYREQNGGAFPLVDIEDGNGNNYISLGSEPFSGLNRLNQDIYTLNENFNIFAGNHTITL
GGTVGYQKFANAFAQFYSGQFRYKSLADFVAAANGNNSIVPLQYQLTYSADASNPQPYAI
FSQMPVAFYAQDEWYVKPNFKLSYGLRLDLPIYTADIQSNPKVTDASFRNGEKLDVGQLP
KTQILFSPRLGFNWDVLKDSRLIIRGGSGIFTGASTGVWLTNQAGNTGLMFGSDLLTNPT
NRPFNANPSAYIPANVNIPSTFAINLTSPNFKLPQIWRSSLAFDYKLPGGILATIEGMYT
KSINEIYHRNANLVNAAGSYSGTGDTRPYFPGVTATSNASAGPNRVNSFITNAIVLDNTN
QGYAWNVTAQLQKRFGAIADVMVAYTRSDARDITSNPGSQANSAYSGNPIVGDPNVPTLA
YSSFVVKNRIIASVNFNFKIIPHSTTSLGFIYEGSPYGDTFGNTRFSYQAGDINGDGNAN
DLMYVPKDANDIQLQAITGANAESVTSQWTRLNQYIDQDKYLSTRRGQYSERNGAEYPWA
NRVDVRIMQEIRTLFGKENGNRFNLSLDIVNFGNLLNKNWGLTKIPNLTTPLVFQGRDAA
TGKPKYTVNQNLGATTFRDNTGFASRYQIQVGARYSFN