Protein Info for CA265_RS05155 in Pedobacter sp. GW460-11-11-14-LB5
Annotation: dihydrolipoyl dehydrogenase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to DLDH_CHLTE: Dihydrolipoyl dehydrogenase (lpd) from Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
KEGG orthology group: K00382, dihydrolipoamide dehydrogenase [EC: 1.8.1.4] (inferred from 92% identity to phe:Phep_3001)MetaCyc: 41% identical to glycine cleavage system L protein 1 (Arabidopsis thaliana col)
GCVMULTI-RXN [EC: 1.4.1.27]
Predicted SEED Role
"Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) / Dihydrolipoamide dehydrogenase (EC 1.8.1.4)" in subsystem Glycine cleavage system or Leucine Degradation and HMG-CoA Metabolism or Photorespiration (oxidative C2 cycle) or TCA Cycle or Isoleucine degradation or Valine degradation (EC 1.8.1.4)
MetaCyc Pathways
- superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle (18/22 steps found)
- folate transformations III (E. coli) (8/9 steps found)
- folate transformations II (plants) (9/11 steps found)
- 2-oxoglutarate decarboxylation to succinyl-CoA (3/3 steps found)
- 2-oxoisovalerate decarboxylation to isobutanoyl-CoA (3/3 steps found)
- glycine biosynthesis II (3/3 steps found)
- glycine cleavage (3/3 steps found)
- glycine degradation (3/3 steps found)
- pyruvate decarboxylation to acetyl CoA I (3/3 steps found)
- folate transformations I (8/13 steps found)
- photorespiration I (5/9 steps found)
- photorespiration III (5/9 steps found)
- reductive glycine pathway of autotrophic CO2 fixation (5/9 steps found)
- photorespiration II (5/10 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Citrate cycle (TCA cycle)
- Glycine, serine and threonine metabolism
- Glycolysis / Gluconeogenesis
- Pyruvate metabolism
- Valine, leucine and isoleucine degradation
Isozymes
Compare fitness of predicted isozymes for: 1.8.1.4
Use Curated BLAST to search for 1.4.1.27 or 1.8.1.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1X9Z1N5 at UniProt or InterPro
Protein Sequence (462 amino acids)
>CA265_RS05155 dihydrolipoyl dehydrogenase (Pedobacter sp. GW460-11-11-14-LB5) MNYDVIVLGSGPGGYVAAIRASQLGLKVAIVERESLGGICLNWGCIPTKALLKSAQVFEY INHAADYGITTAGATADFAAVVKRSRGVADGMSKGVQFLMKKNKIDVIMGTGKVKPGNKL EVKGADGSQQELSAKNIIIATGARSRELPNLKQDGKKIIGYRQAMVLPELPKSMVVVGSG AIGVEFAYFYATMGTKVTIVEFMDNVVPVEDEDVSKQLLRSLKKVGIDVMTSASVESVDT SGAGCKVSVKTASGMQTIEADIVLSAAGIVANIENIGLEETGIKTEKGKIVTDEFYNTSV KGYYAIGDVVGGQALAHVASAEGIICVEKIAGQHAEPLDYNNIPGCTYCTPEIASVGYTE KAAKAAGYELKIGKFPFSASGKASAAGAKDGFVKLIFDAKYGELLGAHMIGANVTEMIAE IVVARKLETTGHEMIKSVHPHPTMSEAIMEAAADAYGEVIHL