Protein Info for CA265_RS04770 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1094 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 332 to 352 (21 residues), see Phobius details amino acids 358 to 377 (20 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details amino acids 435 to 454 (20 residues), see Phobius details amino acids 457 to 487 (31 residues), see Phobius details amino acids 566 to 585 (20 residues), see Phobius details amino acids 910 to 929 (20 residues), see Phobius details amino acids 936 to 956 (21 residues), see Phobius details amino acids 964 to 984 (21 residues), see Phobius details amino acids 1007 to 1027 (21 residues), see Phobius details amino acids 1042 to 1065 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1065 (1062 residues), 630.5 bits, see alignment E=5e-193 PF03176: MMPL" amino acids 864 to 1063 (200 residues), 29.4 bits, see alignment E=4.1e-11

Best Hits

KEGG orthology group: None (inferred from 79% identity to fjo:Fjoh_4285)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z1G4 at UniProt or InterPro

Protein Sequence (1094 amino acids)

>CA265_RS04770 acriflavin resistance protein (Pedobacter sp. GW460-11-11-14-LB5)
MNLIRFALRKPISILVLVAGLFFFGIGAINQIKVDILPQMNLPVIYIAHPFGGYTPDQME
AYFGKQYVNILLFANGIKSIETKNTQGLMLMKLTYYEGTNMAQAAAELSALSTRAQAIFP
PGSQPPFVIRFDASSLPVGQLVLSSPIRTNNELQDLANTYVRPSFSAIPGLLSPAPFGGS
PRTIEINVNPSLLRSHNLTVDQVVEAIRLNNQTAPSGNVRIGDKNYITPTNYTIKKVKDF
ENIPLFKGSVQNLQLRDVATIKDGADLVAGYALINGKRSVYLSIAKSGDASTWDVVKNLK
KNLPNIQNTLPEDVKLSYEFDQSVYVINAVKSLISEGAIGAILTGLMVLLFLGDKRAALI
VILTIPTSIIAGVLFLKLFGQTINIMTLSGLALAIGILVDESTVTIENIHQHFDMGKPKA
LAIWDACKEIAFPKLLILFCILAVFAPAFTMTGIPGALFLPLALAIGFSMVVSFLLSQTF
VPIMANWLMVAHPKKGSEHHPGITQDEADFAATGITLESEKDTLNQKRVLVEREDFSGNG
KIGFFDKFRNRFMRFLDRILPYRKSVVLVYLVVIIGLAALLLVNIGRDVLPRVNSSQFQL
RLRAPDGTRLERTEEKANVVLAELKKMVGEEHMGISSVYVGQHPAQFSVNPIYQFMAGPH
EAVFQVSLKDFEEDMDDFKDQFREKIKKVLPDVKLSFEPIELTDKVLSQGSPTPVEVRIA
GKNKKLNEKYANKILAELKEIPYMRDVQLAQPIKYPSLNIDIDRTRAAQIGVDMADISRS
LIASTSSSRYTDKNIWLDEKAALPYSVQVQVPLNQMTSKDDIGEIPLLKNSARPVLSDVA
KITPDTTAGENDNIGAMPFLSVTANLYHTDLGSASKDVEKAIKDVGELPRGLNVTAIGLS
KVLTDTLDSLQSGLFVAIVVIFLMLAANFQSFKVPLVILATVPAVILGSLLLLTITGSTL
NLQSYMGIIMSVGVSIANAVLLITNAEQLRKHNGNALESAREAAALRLRPIIMTSIAMIA
GMLPMAIGHGEGGGAVSPLGRAVIGGLLASTFAVLIILPLVFAWVQGKQTTDSISLDPED
EESIHYIKGLQENE