Protein Info for CA265_RS03600 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF00400: WD40" amino acids 3 to 39 (37 residues), 20.9 bits, see alignment 4.4e-08 amino acids 85 to 122 (38 residues), 14.5 bits, see alignment 4.7e-06 amino acids 170 to 206 (37 residues), 41.9 bits, see alignment 9.9e-15 amino acids 214 to 248 (35 residues), 32.7 bits, see alignment 8.1e-12 amino acids 265 to 295 (31 residues), 27.7 bits, see alignment 3.1e-10

Best Hits

KEGG orthology group: None (inferred from 66% identity to phe:Phep_3199)

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z0W7 at UniProt or InterPro

Protein Sequence (299 amino acids)

>CA265_RS03600 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MLKHLQTLPGHQNPVYALANSDEDGIFFSAGNDKGVVEWSLHTMAFVKVKMPVQSSVYCL
HYYNKQLFIGERSGAFSVYDFNDQKVIARINAHTKPIFNIQTVKGKNELLTTGEDGTVAV
WSLNDFTEIYRFQVAYDTVRAIAITPNESEVAFGCKDHLIRIYNLADYSLKQSLEGHSLP
VTSLAYHPTGKYLISGSRDAQLKIWDLPNYELRETVPAHMFTVYDIAFHPSLPYFATSSQ
DKSIKLWDAENFKLYKILSLEKAGTGHTHSINKIIWSHDGKCLISTGDDRQVMIWEMEG