Protein Info for CA265_RS03380 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 54 to 76 (23 residues), see Phobius details amino acids 96 to 113 (18 residues), see Phobius details PF12725: DUF3810" amino acids 36 to 350 (315 residues), 284.8 bits, see alignment E=4.7e-89

Best Hits

Predicted SEED Role

"FIG00907803: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z152 at UniProt or InterPro

Protein Sequence (378 amino acids)

>CA265_RS03380 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MISFKKLVRSKTFIIATAAFLVFLIGLSENLTEKIYFNNFYPLISKLLRFLSSPFPFAIG
DILYILLVAYLLWYFFKTFKKYRAKAISLKQIGIKCLNLILVLYLVFKLSWALNYSRPAI
ATKLGIANEKYNTAQLVTLGKYFLIRITHLKLKIDSMNSRPKLYSVAGLSKTAALSYQLQ
AKQNTAFNYAITSVKPCLFAGYVAKSGIEGYYNPLSGEANINMNLPPFILPFTICHEIAH
QTGIAKEDEANLLGYITAIKSDDINFQYAGYYCMFRSILWEIRVKSPNDYQMIFERIAPT
VLADFKTENQFWLKNNSDMSKYMSVAFDRLLKLNNQKKGINSYQDIVLWLYNYHKKDLEK
SLSRGSSENWITKDLQRN