Protein Info for CA265_RS03185 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details PF04138: GtrA" amino acids 26 to 156 (131 residues), 40.7 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: None (inferred from 41% identity to phe:Phep_3272)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z1A6 at UniProt or InterPro

Protein Sequence (170 amino acids)

>CA265_RS03185 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MRKIILAVIDFFHPPFKNFISLHNFRYLATGGGTLLLGILSYYFAYFFIFKTEEVDFGVI
VLQRETASLLVDYAIAIPTSFLLNKYIIFTHSELKGRVQLFRFLNLQFINILANYVLLKF
LLELLRDYPTLAMLSRILVSVLMALFSYLYQHYFTFSVKKIGGKKAGKKH