Protein Info for CA265_RS02605 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details PF06580: His_kinase" amino acids 151 to 230 (80 residues), 88.2 bits, see alignment E=1.8e-29

Best Hits

KEGG orthology group: None (inferred from 43% identity to sli:Slin_3174)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z0J0 at UniProt or InterPro

Protein Sequence (335 amino acids)

>CA265_RS02605 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKTIKIVSIHILCWVLVLGYFYGGYLIDGTTFTKAALSISMNFIQLIEFYICYVWVYPRF
LKRNKLPQLIAGILFTIAVFISLRYLIEEVLYLKWLGFHNYNDGVTAWAYISDNIYWSIA
FIVVPAAVYGIEQSFKSEQVNRKLKEEVVKAELSFLKSQINPHFLYNTLNYVYSLAIPVS
DQLANAILRLSDLMRYTLNDSPDGKVSLDKEVEYLESYVALFKMRFEPKFYVDFTTEGIT
GQKIASLILIPFVENAFKHGVVNDEAQPVRIKLKVQNKRLSFEVSNKISHAQKDHSSGVG
MVNIHRRLDLIYPEKHELLISNNGNTYKSTLILNL