Protein Info for CA265_RS02585 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1083 PF13715: CarbopepD_reg_2" amino acids 96 to 176 (81 residues), 52.6 bits, see alignment 7.7e-18 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 96 to 1083 (988 residues), 845.3 bits, see alignment E=8.9e-258 PF13620: CarboxypepD_reg" amino acids 96 to 164 (69 residues), 38.4 bits, see alignment 2.6e-13 PF07715: Plug" amino acids 184 to 288 (105 residues), 63.8 bits, see alignment E=4e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 265 to 294 (30 residues), 51.7 bits, see alignment (E = 5.9e-18) PF00593: TonB_dep_Rec" amino acids 372 to 863 (492 residues), 49.8 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 52% identity to cpi:Cpin_0004)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZC68 at UniProt or InterPro

Protein Sequence (1083 amino acids)

>CA265_RS02585 SusC/RagA family protein (Pedobacter sp. GW460-11-11-14-LB5)
MLASAGMAQKLEKTTVSITINKGRKITEIIKEIESRTGLSFVYNPDQLQQKNMFVSGDFT
TEPVRSLLDRLGLQVLEKGGYVILNNAVFNKPDRIITGIVKDSTGVTLPGVSVKVLGTQS
GTITDGNGAYRIEVGADAILSFSMIGYRTKEVKVGENQVINMVLSEERSTLADVVVVGYG
TQKKETLTGAITIVGLDKLSSRSLNSVGEVLAGKSPGVIVTNEGGDPTATPRINIRGAGG
INGESVLYVIDGSIFLGVPQLNPNDIESISVLKDGASAIYGARASGGVILITTKKGKSGK
MQISFDAKLGQQSAWRKLEPLNAQQRAQVAATAAKNGGTTILPAFDASKYPDGQVTRTNW
MDEVFRNGMVQDYNAAINGGSEKSNYYLSFNYRNAEGIVLNTQTKRYNFRINTEHEVTNW
LKVGENLSYSSTNGNGANTSSDYTGALLSAIYYPTNGTPYNADGSFAGLPGGQYAGDYGD
IVNPVADLQRIDINNPVNVLVVNPYVNVKLIKGLTFRSNLSITKSDAAFKSFTPKRPEVG
KPVLSNSLQESSSRSNDFLAEQVLSYKATFGSHQLDLTGGYSFQKTKSNSLSASGAGFDD
ESPQYRYLVNATVIQPSVSGMSEQALSSLFVRANYNYKEKYLLSLIGRRDGSSLLSKNNR
TKNYGSASAGWVVSKEDFLKDASWLNELKLRGSYGILGNLASLNASAVNPLLSATQSYFG
QTPTLQNGYVQTVLANKDLTWAESKQTNFGIDVAVLGRLSLNADYFIKETNKMILTRSLP
GTAGLNTQTINAGIVKDKGIELGLTYNSDKNAAFTYSVNATLTKVNNKVQELAPGLENIA
VGTNFRNELAPLTIRVGQPLYSYYVLKTDGIFQSQAEADNYKNAKGTKIQPNAKAGDFKF
VDINGDGSIDGNDRYFAGSAYPDFTYGLSFNASYKNFDINIFAQGVQGNKLFNAVKRTTY
SASGPSYNKLVGILDAWSPENPGGKVPIISTSDANGNFNASDFYIEDGSYLRIRNVTLGY
SLPKSLANKLKTGGVRIYATANNLFTITNYSGFDPEIGMDNNGLDVGRYPQARSFILGLS
VNL