Protein Info for CA265_RS01865 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 220 to 239 (20 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details amino acids 319 to 345 (27 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details PF04403: PqiA" amino acids 299 to 388 (90 residues), 42.2 bits, see alignment E=4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZZ8 at UniProt or InterPro

Protein Sequence (441 amino acids)

>CA265_RS01865 paraquat-inducible protein A (Pedobacter sp. GW460-11-11-14-LB5)
METQKTHLKERKSFLPKLLLILSLAALLVAEGYFGLRLHQLSDQQERIKEDYSNINNITY
GLFSVQQWKDNVSRIVHHQVRNLKMTKKQKKILQTEVQNVLLALIDKAEALVNKPKKTIS
GKIQKFAIRNFVNSDSIRAQVPAFAKKIIAEVDNPKNKRQLSKMAMGEFNELANEEKLDS
AFVANGASVRALYKKYHVSSTDALNKNLVQTLSEIRSKTYSYSFGMLACVVVVLGFWWGL
RKRRDLHTTLFVMSLLFAFILLAVGLTASMIEVDARIRSLDFVLLGEHVVFKDQVLFFQS
KSIMDVVSVLISQPGIDSILVGVLILVFSILFPAVKLSSTGIHLLGNKKLAENKVIKYFA
FQSGKWSMADVIVIAILMAYIGLNGLLEGQLQALNIKNDSLTILTTNNTALQPGYIIFIS
FVLYGLILSTILKFITPHDAH