Protein Info for CA265_RS01635 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 transmembrane" amino acids 129 to 151 (23 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 56 to 221 (166 residues), 37.4 bits, see alignment E=5.5e-13 PF20706: GT4-conflict" amino acids 226 to 355 (130 residues), 33.4 bits, see alignment E=5.2e-12 PF13692: Glyco_trans_1_4" amino acids 238 to 359 (122 residues), 59.5 bits, see alignment E=9.3e-20 PF00534: Glycos_transf_1" amino acids 238 to 387 (150 residues), 88.8 bits, see alignment E=6.4e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZK9 at UniProt or InterPro

Protein Sequence (420 amino acids)

>CA265_RS01635 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MIKRVSCFKEFTLKIIHITASYKPAYIYGGPIQSVGKLCEALIGLAVSGEELGINDVQIL
TTTANGTNELDVAIGKPVLVEGVKVTYFKRWSKDHSHFSPGLLLRLRKEIRRQAQNDSNT
KRQTPNAKLIIHIHAWWNLVSVLSCLVARWYKVPVLLSPRGMLTSYTFGNRNSFSKKIIH
NLLGKQLLKYCHIHATSEQEKTDILKIITPKSIKVIPNLVSFQFSTSSFQISTNDIFRLL
FLSRIEEKKGLELLFDALTLVDIPWRLTIGGTGQEEYIQGLKDKAEKLKLSARINWLGLI
SNEEKFNLMAAHDLTVLTSYNENFANVVVESLSVGTPVLISKFVGLADYVADKNLGWITG
LNIEEIKTGIISAQLDIEKRKAIRTTAPLQINTDFNDDVLAKQYVDFYEEILATPSAINP