Protein Info for CA265_RS01485 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1046 transmembrane" amino acids 762 to 783 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 286 to 308 (23 residues), 18.5 bits, see alignment (E = 3.3e-07) amino acids 334 to 356 (23 residues), 15.6 bits, see alignment (E = 2.9e-06) amino acids 514 to 537 (24 residues), 17.6 bits, see alignment (E = 6.5e-07) PF07495: Y_Y_Y" amino acids 693 to 757 (65 residues), 45.9 bits, see alignment 8.3e-16 PF00512: HisKA" amino acids 813 to 876 (64 residues), 44 bits, see alignment 3.8e-15 PF02518: HATPase_c" amino acids 925 to 1030 (106 residues), 70.4 bits, see alignment E=3.4e-23

Best Hits

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZV3 at UniProt or InterPro

Protein Sequence (1046 amino acids)

>CA265_RS01485 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MFTVHLLWAQPYYFRHYQVENGLSNNTAFCSVQDGKGFMWFGTKDGLNRLDGYSFKTYRH
DPDQAGSLGNDLIYALHHDQEQSLWVGTNNGVYQYNAAKESFAIIKETKGMRIIDLASDQ
RGNLWILSSFKIYLYQKRTRKIQAFTHNAPFDASLVTVLKDGSVWISTGKGTLEKYNPRE
NNFQQFNINGKNAKTEYGWVSRIAETENGNLLVGTTNQGVKLFNPVTLASKNILSLNDDQ
TPIFVRDIKKTGAHEFWIATESGIYIYNDENETIIHIKKQYNNDYSLSDNAVYTICLDRE
GGVWTGTYFGGVNYYSSRTSLFTKYFPQKGTNSISGSDVREITRDANGNFWIGTEDAGLN
KLDIKTGLFKHFLPDGKPGSIAYSNIHGLLVDCDKLWVGTFEHGLDVLDLKTEKVIKHYQ
AGAGNALRTNFIVTFCKTRSGEILVGTINGIYRYNRKRDDFEPIAGLPFIFYDSVIEDSK
GNIWAGSFNDGLFQFNLSKPGYVNYRNNPTVIKSLSHNTVNSIFEDRKQQIWVTTDGGGL
CRFDQKTQQFKRYGIKNGFPSNYLFRIEEDAANKFWISSTRGLIHFDPTTGLSKTYSKAN
GLLTDQFNYSSAYQDETGRTYFGSVKGLVSFNPANLKATTYETPVFLTGFQINSSEIGLN
GTDSVANKSIVYADTIELNYNQSSFSIDFAALSYLSPEMTEYAYKMTGLYKNWEYLKTNR
KVYFTKLAPGNYIFEVKALVEGSSTWSTKNAKLLIKIHPPFYLSPLAYLLYLIAAGGIIF
FLVRRYHRKIALKNSRRMEVFEHEKQKEVYQAKIEFFTNVAHEIRTPLTLIIGPMEKLIK
QADAVPAIEKNLRIMGRNTDRLLKLTNQLLDFRKTETSEFSLNFVKADISEILKDVFLQF
QPAAEQHDIKYNLHLPEKKLHAYIDVEAFYKMISNLIDNAIKYGKTTVQINLSLQEGDQF
AVMVKNDGHRIPIEIKDKIFEPFFRGKETEIKAGTGIGLSISKSLAQLHRGELYLDFNDR
DFNIFVLELPIHQLIEFNLNGKWKKL