Protein Info for CA265_RS01315 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: alpha-1,3-galactosidase B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details

Best Hits

Swiss-Prot: 60% identical to GLAB1_BACV8: Alpha-1,3-galactosidase B (glaB1) from Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154)

KEGG orthology group: None (inferred from 60% identity to bvu:BVU_0104)

MetaCyc: 59% identical to alpha-1,3-galactosidase B (Bacteroides fragilis)
3.2.1.M27,3.2.1.M26 [EC: 3.2.1.M26, 3.2.1.M27]; 3.2.1.M27 [EC: 3.2.1.M26, 3.2.1.M27]

Predicted SEED Role

"FIG00898157: hypothetical protein"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.M26 or 3.2.1.M27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZC45 at UniProt or InterPro

Protein Sequence (601 amino acids)

>CA265_RS01315 alpha-1,3-galactosidase B (Pedobacter sp. GW460-11-11-14-LB5)
MSLSIIFFSLTLSLSAQTKVKVYHLSTYGIIPNNGKNSTSKLSEVLKKIKNETKYNDSVV
VKFKKGRYDFYPEGAAIKTYYVSNHDQNNPKTVGIALEQFKNLTIEGNGADLMFHGRMLP
VALVEASNVKLQNLSIDFEKPQIAQVKIIENDTIKGNIVFETAPWVKYLIKDSVFYNTGE
GWQMQPTSGIAFEGKTKHIVFNTGDIRVGTKGVSEISPGKIRAYNWKNKKLVPGTVIAMR
SWARPAPGIFVHKGKNISLVNVKVHYAEGMGLLAQLTENIYMDGFGVCLRGDHDPRYFTT
QADATHFSGCKGIITSKNGLYEGMMDDAINIHGTYLKLVKKIDSKTVIGNYMHSQSYGFD
WGYAGDSVQFIQSKTMELWDVKNTIAAIEPIRGNESDPIKSFKIEFTKELDAEIDPSKQD
IGIENLTWTPAVQFTGNTIRNNRARGALFSTPKKTLVARNLFDHTSGTAILLCGDSNGWY
ETGACRDIEITDNKFVNALTSMYQFTSAVISIYPEIPDLKNQKKYFHSGIRIHHNQFDTF
DYPILYAKSVDGLTFSDNKIIMNKEYPAFHANKNVISFNRVVRADIRNNSVNGQVTDLSV
K