Protein Info for CA265_RS01135 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 844 signal peptide" amino acids 28 to 29 (2 residues), see Phobius details transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 265 to 289 (25 residues), see Phobius details amino acids 310 to 338 (29 residues), see Phobius details amino acids 357 to 382 (26 residues), see Phobius details amino acids 405 to 423 (19 residues), see Phobius details amino acids 431 to 455 (25 residues), see Phobius details amino acids 483 to 506 (24 residues), see Phobius details amino acids 718 to 741 (24 residues), see Phobius details amino acids 763 to 793 (31 residues), see Phobius details amino acids 806 to 828 (23 residues), see Phobius details PF12704: MacB_PCD" amino acids 31 to 229 (199 residues), 54.9 bits, see alignment E=1.5e-18 PF02687: FtsX" amino acids 269 to 387 (119 residues), 54.6 bits, see alignment E=1.1e-18 amino acids 722 to 836 (115 residues), 57 bits, see alignment E=1.9e-19

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 67% identity to phe:Phep_1597)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZI7 at UniProt or InterPro

Protein Sequence (844 amino acids)

>CA265_RS01135 ABC transporter permease (Pedobacter sp. GW460-11-11-14-LB5)
MPNNLPKQSIKFSWLFKMAWRDSRKNRARLLLFISSIVLGIAALVAVYSFKDNLQKDIDA
QAKELTGADLVLDSRKGVSKAIQKMLDTLGDERSQEKTFASMIYFQKGGGSRLVQMKALE
GNYPYYGTIETIPLAAAKHFQSGRNALVDQTLMMQFNAKVGDSVKIGDLNFNILGTLTKA
PGQTGIGASIAPTVYIPLQTLDKTNLIKTGSRINNKFYFRYNDPSKIDEWVKKQDSKLEK
EGFDADTVESRKEQTGRSFKDVNRFLALSGFIALLLGCVGVGSAIHVYIQEKLSAIATLR
CLGLKSRHAFLIYLIQVFFIGLIASVLGAALGTGIQFLLPLVLKDFLPIEISMQVSWLAV
GQGVLLGLIISVLFALPSLLSVRRISPLNAIRISFEKASGKRDPLTWLVYLLMAVFITAF
THLQMKTWFQTLAFTASIAIAFVLLIILSKLLMFLVRKLLPNSSPYLWRQGFANLYRPNN
QTLMLTVSIGLSTAFICTLFFVQGILMSRVTLSSGANQPNMVMFDIQNTQKEGLDSLTKA
FKLPLMNQVPVITMRIEEINGKKASADTNNRRAYRNEIRATYQDTLTAAEKITSGKWIGK
IKPNETVYISLDQRYAQQIHVKLNDKILFNVQGMMIPTVVGSLREVNWSRMQTNFRVVFP
AGVLEEAPQFHVLMTRVPSGEVSARFQGEVVQKFPNVSVIDLDLVLKLLDELLSKIGFVI
QFMAGFSMVTGWIVLISSVLTSKNQRIKESILLRTMGASRKQILAINAIEYFFLGAFAAG
AGLILAISGSWALAKFTFDASFVPPFIPTILLFGSIVLLVVITGILSTRSILNQPPLKIL
RTES