Protein Info for CA265_RS00935 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF16576: HlyD_D23" amino acids 61 to 295 (235 residues), 113.5 bits, see alignment E=1.3e-36 TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 70 to 353 (284 residues), 142.3 bits, see alignment E=8.6e-46 PF13533: Biotin_lipoyl_2" amino acids 191 to 229 (39 residues), 26 bits, see alignment 9.6e-10 PF13437: HlyD_3" amino acids 194 to 293 (100 residues), 55.1 bits, see alignment E=1.7e-18

Best Hits

KEGG orthology group: None (inferred from 51% identity to fte:Fluta_3857)

Predicted SEED Role

"Probable Co/Zn/Cd efflux system membrane fusion protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZL2 at UniProt or InterPro

Protein Sequence (377 amino acids)

>CA265_RS00935 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKNKLISGLMCIAILIACGSPEKNEKAAETPKNLNTDEVQLSAEQVKNADIQLGKLTEKV
LRNTINVNGVVDVPPENTYSVSVPMGGYIKKMTLIPGMMVKKGSLLAIVEDQQYIQLQQD
YLTSKNKLKFSSADYTRQKGLNQTKATSDKIFQQAESEFNNQKVLVKSLAEKLRLIGINP
LTLNEDNISRSIRINAPISGYVTKVNVNTGKYVNSADILFELISPDALHANLTVFERDAA
QLKIGQEILCTTTANPDQKYVAKIHLITPNIEDDRTTSVHCDLKNGDSKLLPGTFLNAVI
SVSSAAVQAVPEDAVVKWENKHYVFADLGRNHYKMIPVEIGTSLDGFTAIHSKSKLDNIV
VKNAYAILMKMKNSGEE