Protein Info for BWI76_RS27210 in Klebsiella michiganensis M5al

Annotation: glycerol-3-phosphate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF01210: NAD_Gly3P_dh_N" amino acids 8 to 164 (157 residues), 181.3 bits, see alignment E=3.3e-57 PF02558: ApbA" amino acids 9 to 115 (107 residues), 35.4 bits, see alignment E=2e-12 PF07479: NAD_Gly3P_dh_C" amino acids 184 to 323 (140 residues), 190.8 bits, see alignment E=3.4e-60 PF20618: GPD_NAD_C_bact" amino acids 244 to 310 (67 residues), 89.3 bits, see alignment E=4.9e-29

Best Hits

Swiss-Prot: 97% identical to GPDA_KLEP3: Glycerol-3-phosphate dehydrogenase [NAD(P)+] (gpsA) from Klebsiella pneumoniae (strain 342)

KEGG orthology group: None (inferred from 97% identity to eae:EAE_06250)

MetaCyc: 94% identical to glycerol-3-phosphate dehydrogenase (Escherichia coli K-12 substr. MG1655)
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)). [EC: 1.1.1.94]

Predicted SEED Role

"Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization or Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 1.1.1.94)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.94

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285BBR5 at UniProt or InterPro

Protein Sequence (338 amino acids)

>BWI76_RS27210 glycerol-3-phosphate dehydrogenase (Klebsiella michiganensis M5al)
MNALNAAMTVIGAGSYGTALAITLARNGHEVVLWGHDPKHIATLQNDRCNAAFLPDVPFP
DTLHLESDLATALAASRDILVVVPSHVFGQVLRQIKPLMRPDARLVWATKGLEAETGRLL
QDVAREALGEAIPLAVISGPTFAKELAAGLPTAISLASTDPQFADDLQSLLHCGKSFRVY
INPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVEMSRLGEALGADPETF
MGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYRNTKEVRVLAQRL
GVEMPITEEIYQVLYCGKIAREAALTLLGRARKDERSN