Protein Info for BWI76_RS25270 in Klebsiella michiganensis M5al

Annotation: ribosome hibernation promoting factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 95 TIGR00741: ribosomal subunit interface protein" amino acids 1 to 95 (95 residues), 119.9 bits, see alignment E=2.9e-39 PF02482: Ribosomal_S30AE" amino acids 3 to 93 (91 residues), 97.4 bits, see alignment E=3.2e-32

Best Hits

Swiss-Prot: 100% identical to HPF_KLEOX: Ribosome hibernation promoting factor (hpf) from Klebsiella oxytoca

KEGG orthology group: K05808, putative sigma-54 modulation protein (inferred from 98% identity to kpu:KP1_4925)

Predicted SEED Role

"Ribosome hibernation protein YhbH" in subsystem Ribosome activity modulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285BAN4 at UniProt or InterPro

Protein Sequence (95 amino acids)

>BWI76_RS25270 ribosome hibernation promoting factor (Klebsiella michiganensis M5al)
MQLNITGHNVEITPAMRDFVTAKFSKLEQFFDRINQVYIVLKVEKVTQIADANLHVNGGE
IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH