Protein Info for BWI76_RS25180 in Klebsiella michiganensis M5al

Annotation: 50S ribosomal protein L27

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 85 TIGR00062: ribosomal protein bL27" amino acids 1 to 83 (83 residues), 144.5 bits, see alignment E=3.8e-47 PF01016: Ribosomal_L27" amino acids 2 to 82 (81 residues), 134 bits, see alignment E=7.7e-44

Best Hits

Swiss-Prot: 99% identical to RL27_CITK8: 50S ribosomal protein L27 (rpmA) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

KEGG orthology group: K02899, large subunit ribosomal protein L27 (inferred from 94% identity to ddc:Dd586_0587)

MetaCyc: 95% identical to 50S ribosomal subunit protein L27 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L27p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285BAD6 at UniProt or InterPro

Protein Sequence (85 amino acids)

>BWI76_RS25180 50S ribosomal protein L27 (Klebsiella michiganensis M5al)
MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGTNVGCGRDHTLF
AKADGKVKFEVKGPNNRKYISIVAE