Protein Info for BWI76_RS23440 in Klebsiella michiganensis M5al

Annotation: porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06178: KdgM" amino acids 15 to 231 (217 residues), 208 bits, see alignment E=1.6e-65 PF13609: Porin_4" amino acids 36 to 212 (177 residues), 27.2 bits, see alignment E=3.4e-10

Best Hits

KEGG orthology group: None (inferred from 89% identity to kva:Kvar_0803)

Predicted SEED Role

"N-acetylneuraminic acid outer membrane channel protein NanC" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B7V3 at UniProt or InterPro

Protein Sequence (231 amino acids)

>BWI76_RS23440 porin (Klebsiella michiganensis M5al)
MFARSLALAALCGMSFAASAVTVDLRHEFIDGGKSDKSNADRVSVSHRFDNGFGFSVEAK
WKSGGDNASQPYSDVVGNGHEETISWRWKADKNFAVTPGFVIESNDSRSIYKPNLHVQYS
FDNGFYVAARYRYEYTRYPASAGKDDDKVNRGDAWAGFVLGDWRTELNYVYARSSEGVNR
NDNKPYSQEYNLKVAYKLDKNWAPYGELGNVGVNDRSDRQTRFRVGVAYSF