Protein Info for BWI76_RS19185 in Klebsiella michiganensis M5al

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 PF00005: ABC_tran" amino acids 35 to 185 (151 residues), 110.7 bits, see alignment E=9.5e-36 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 235 to 321 (87 residues), 90.9 bits, see alignment E=2.1e-30 PF08352: oligo_HPY" amino acids 237 to 302 (66 residues), 73.8 bits, see alignment E=1.1e-24

Best Hits

Swiss-Prot: 48% identical to Y4TS_SINFN: Probable peptide ABC transporter ATP-binding protein y4tS (NGR_a01400) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 83% identity to ddc:Dd586_2915)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B6I5 at UniProt or InterPro

Protein Sequence (344 amino acids)

>BWI76_RS19185 ABC transporter ATP-binding protein (Klebsiella michiganensis M5al)
MANAHWPLLEADNLCVTFPVSGGLWQPKRVVHAVNQVTMQIFPGETLGLVGESGSGKSTL
GRALLQLERVADGEVRFEGQRITHGLTSDIARLRQQSAMIFQDPFASLNPRQSVGESIAE
VLRVHQKVPRGQEALRVAELLTLVGLRPQQASAKPAQLSGGQCQRVGIARALAMEPRLIV
ADECVAALDVSIQGQIVNLLMDLREKMGLAILFIAHDLAIVRRLCDRVAVMYLGRIVEEG
PAEAVFTRPLHPYTAALVSAIPEIDPDKPLPKNLLGGEPPSPVAVPQGCAFHPRCPYAQV
QCRTGAPPPTRQIADRAYACVLNLAGDETVFPLTGGSFDEAQAS