Protein Info for BWI76_RS18660 in Klebsiella michiganensis M5al

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 875 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details PF13954: PapC_N" amino acids 45 to 189 (145 residues), 164.6 bits, see alignment E=2.3e-52 PF00577: Usher" amino acids 205 to 787 (583 residues), 729.2 bits, see alignment E=5.7e-223 PF13953: PapC_C" amino acids 800 to 860 (61 residues), 69.7 bits, see alignment 2.2e-23

Best Hits

Swiss-Prot: 80% identical to FIMD_ECOLI: Outer membrane usher protein FimD (fimD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 86% identity to eae:EAE_02425)

Predicted SEED Role

"type 1 fimbriae anchoring protein FimD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (875 amino acids)

>BWI76_RS18660 hypothetical protein (Klebsiella michiganensis M5al)
MSHLKYGLAHVGSRRMTPGSVRAFAQIPLALLLASPAFYAQAELYFNPRFLADDPAAVAD
LSGFEKGQELPPGTYRADIYLNDGYMTTRDVTFNAGEKGHGLAPCLTRGQLAGMGVNTSA
IAGIDVLAADACVPLTEMIKDATTRFDAGQQRLYLTIPQAFMGNRARGYIPPELWDHGIN
AGLLNYNFTGNNVHNDVGGSSNYAYLNLQSGLNLGAWRLRDNTTWSYSSGGSSSTSENKW
QHINTWLERDITLLRSRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGFAPVIHG
IARGTAQVSVKQNGYEIYQSTVPPGPFTINDLYSAGSGGDLQVTIKEADGSSQVFTVPYS
SVPVLQREGHTRYAVTAGEYRSGSNQQEKPTFFQGTLLRGLPAGWTLYGGTQLADRYRAF
NLGVGKNMGELGALSLDITQANATLPDDSNRQGQSVRFLYNKSLTDTGTNIQLVGYRYST
RGYFSFADTTYSRMSGYNVETQDGVIEVKPKFTDYYNLAYNKRGKVQLSVTQQLGRTATL
YLSGSHQTYWETSKSDRQLQAGLNAAVDDINWTLSYSLTKNAWQQGRDQMLAVNVNIPFS
HWMRSDSKSAWRHASASYSMSNDLNGRTTSLAGLYGTLLEDNNLSYSMQTGYAGGGEGNS
GGTGYAALNYRGGYGNANVGYSRSDGIKQLYYGLSGGVLAHADGVTLSQPMNDTVVLIKA
PGADNVKVENQTGVQTDWRGYAVLPYATEYRENRVALNTNSLADNVDLDDAVASVVPTHG
AIVRAEFKAHVGLKLLMSLIYNGKPVPFGALVTSVGSQGSSIVADNGQVYLSGMPLVGKV
QAKWGEGPNASCEANYSLPPEKQSQMLISLSAECR