Protein Info for BWI76_RS16840 in Klebsiella michiganensis M5al

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF00005: ABC_tran" amino acids 36 to 173 (138 residues), 111.5 bits, see alignment E=2.6e-36

Best Hits

Swiss-Prot: 47% identical to TAUB_ROSDO: Taurine import ATP-binding protein TauB (tauB) from Roseobacter denitrificans (strain ATCC 33942 / OCh 114)

KEGG orthology group: None (inferred from 94% identity to eae:EAE_17265)

Predicted SEED Role

"Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B4W5 at UniProt or InterPro

Protein Sequence (262 amino acids)

>BWI76_RS16840 ABC transporter (Klebsiella michiganensis M5al)
MVTANARPQAASAGAAVSISHLHHAFSLGKQMVPVLENISLQLRPGESVALLGPSGCGKS
TLLRLLAGLEPQQSGQIQIDEAAMGGPGPERILVFQDPTLYPWLTVRQNVLLGPQAQGKK
GLEPKADALISRIGLQGFSEAWPRQLSGGMAQRAALARALLNEPRLLLLDEPLGKLDSLT
RISMQRELIALWQQQGYTSLLVTHDIEEALLLCERVLVMSPRPGRIIAEFALPLAFPRHR
DNPLLVQHRQDILRILGQEEDW