Protein Info for BWI76_RS16810 in Klebsiella michiganensis M5al

Annotation: RpiR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 148 to 155 (8 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details PF01418: HTH_6" amino acids 22 to 83 (62 residues), 32.2 bits, see alignment E=8.9e-12 PF01380: SIS" amino acids 141 to 245 (105 residues), 37.5 bits, see alignment E=2e-13

Best Hits

KEGG orthology group: None (inferred from 89% identity to kva:Kvar_2175)

Predicted SEED Role

"FIG00732392: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B4U9 at UniProt or InterPro

Protein Sequence (299 amino acids)

>BWI76_RS16810 RpiR family transcriptional regulator (Klebsiella michiganensis M5al)
MKMAVKREKGRVDLFGERFRARAHQLSPRLLAVASYINDNREAVLERTAMEIASATNTSD
ATVVRAIQALGFAGLRELKQTMERWFGPSATSSEKMISTVSALSSDVHSSIDFVLEGHQR
ACEVLSRPDNRAAVAQAVALLTGARQVGIFGIGASGILAEYTARLLSRIGLPSYVMNRTG
FSLAEQLIGLQRGDVLIMMGQKSPHREGMTTLREARRLGIPTILLTQALDSRFSQQAQVV
IEVPRGGDNGRVPLHGTVLVCLEMIVLSVASTAPQKTVKSMKRINELHRAIGKSGGKRS