Protein Info for BWI76_RS14560 in Klebsiella michiganensis M5al

Annotation: peptidoglycan-binding protein LysM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 PF04972: BON" amino acids 27 to 90 (64 residues), 38.6 bits, see alignment E=1.1e-13 PF01476: LysM" amino acids 99 to 147 (49 residues), 42.5 bits, see alignment E=5.1e-15

Best Hits

Swiss-Prot: 64% identical to KBP_ECOLI: Potassium binding protein Kbp (kbp) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to eae:EAE_03330)

Predicted SEED Role

"FIG00731387: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B418 at UniProt or InterPro

Protein Sequence (149 amino acids)

>BWI76_RS14560 peptidoglycan-binding protein LysM (Klebsiella michiganensis M5al)
MGLLNFVKEAGEKIWDAVSGGSKEDKADKLKKHIDGLNLPGAEKVNIDVADDGTATVTGD
VGSQEDKEKILVAVGNVTGVGQVNDSVKVTQSGAESRYYTVKSGDTLSAISKAMYGSANE
YQRIFEANKPMLTHPDKIYPGQVLIIPAK