Protein Info for BWI76_RS13560 in Klebsiella michiganensis M5al

Annotation: amino acid ABC transporter substrate-binding subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00497: SBP_bac_3" amino acids 61 to 280 (220 residues), 71.3 bits, see alignment E=3.3e-24

Best Hits

KEGG orthology group: None (inferred from 85% identity to kpe:KPK_2458)

Predicted SEED Role

"Periplasmic binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B3M1 at UniProt or InterPro

Protein Sequence (297 amino acids)

>BWI76_RS13560 amino acid ABC transporter substrate-binding subunit (Klebsiella michiganensis M5al)
MRNGLLALTLLSLSAASQAAIDLRANEQPLPVTRDEQAIAKIPANYAFVEPGTLTVAISA
LNSPPLALLASDNRTRIGSDPDIARLLAGSLGLKLKLVPTAWEDWPLGMTSGRYDVALVN
IAVTEQRKEKFDFATYRVDSLAFSVKSTSDIASVSGPADLAGKKVIVGSGTNQERILLGW
NAENEAAGRQPALPVYLTDDASGNLYIQSGRADVFFGPQSVAAYKAALSGKTKVVGLGPK
KAYVATTTKKGNGLVVALQAALNGAIARGEYQKVLARWGEQGEEVTQSTVNPPGITY