Protein Info for BWI76_RS13455 in Klebsiella michiganensis M5al
Annotation: salicylaldehyde dehydrogenase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 59% identical to VDH_PSEFL: Vanillin dehydrogenase (vdh) from Pseudomonas fluorescens
KEGG orthology group: None (inferred from 85% identity to kpn:KPN_01919)MetaCyc: 58% identical to vanillin dehydrogenase (Pseudomonas sp. HR199)
Vanillin dehydrogenase. [EC: 1.2.1.67]
Predicted SEED Role
"4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)" in subsystem Polyamine Metabolism (EC 1.2.1.19)
MetaCyc Pathways
- superpathway of L-arginine and L-ornithine degradation (13/13 steps found)
- superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation (11/11 steps found)
- superpathway of ornithine degradation (8/8 steps found)
- L-lysine degradation X (5/6 steps found)
- putrescine degradation I (2/2 steps found)
- vanillin and vanillate degradation II (2/2 steps found)
- L-lysine degradation I (5/7 steps found)
- putrescine degradation IV (2/3 steps found)
- superpathway of vanillin and vanillate degradation (7/10 steps found)
- putrescine degradation V (1/2 steps found)
- vanillin and vanillate degradation I (1/2 steps found)
- 4-coumarate degradation (aerobic) (1/5 steps found)
- pinoresinol degradation (1/10 steps found)
- superpathway of L-lysine degradation (12/43 steps found)
KEGG Metabolic Maps
- 2,4-Dichlorobenzoate degradation
- Arginine and proline metabolism
- Biosynthesis of phenylpropanoids
- Urea cycle and metabolism of amino groups
- beta-Alanine metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.2.1.19
Use Curated BLAST to search for 1.2.1.19 or 1.2.1.67
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A285B3I3 at UniProt or InterPro
Protein Sequence (477 amino acids)
>BWI76_RS13455 salicylaldehyde dehydrogenase (Klebsiella michiganensis M5al) MTITCSLYTNGQWHDAEGRGTFTRNNPLTQETASVASAASLADARRCADTAGAAFPQWRD TVPAERRRLLLEAAEEMLRREAKFIAAMAAETGATAHWAGFNVHLAADILREAAALTTQI EGQVIPSNVPGNLALAIRQGAGVVLGMAPWNAPLILATRAIATPLACGNTVILKGAELSP ATQGLIIDALAAAGFPAGVVNYLTCPPADAPALVESLIAHPAVRRINFTGSTPVGRIIAR TCGEHLKPAILELGGKAPLLVLDDADLEQAAAGAIFGAFANAGQICMSTERIIVDAAVAE PFVALLAKRAAALPASLLGPVVEMRTVARCNALIEDALAKGARLLAGGMSDSTQMRATLL DGVTREMRIWHEESFGPVKSIIRVQDEAEALAVANESEYGLSSAIYSRDSARAWNLAQNL QTGICHINGPTVHDEAQMPFGGCKSSGYGRFGGRAGVAEFTELRWITLQTVPRELPF