Protein Info for BWI76_RS13020 in Klebsiella michiganensis M5al

Annotation: NmrA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF01370: Epimerase" amino acids 7 to 218 (212 residues), 54.2 bits, see alignment E=2.1e-18 PF13460: NAD_binding_10" amino acids 11 to 118 (108 residues), 37.1 bits, see alignment E=4.7e-13

Best Hits

KEGG orthology group: None (inferred from 78% identity to ddc:Dd586_2513)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>BWI76_RS13020 NmrA family protein (Klebsiella michiganensis M5al)
MVTRGRVLILGATGGIGGETARRLIQKKWDVRALKRGFHGSERSGDIQWIGGDALDPEQV
AAAAADCSAIVHAVNPPGYRNWEHLVLPMLRNTTSAAERAGALVVLPGTVYNYGPDAFPL
VREDAQQMPVTKKGAIRVQMEKELEAYSQRGGRVLIVRAGDFFGPRAGNNWFSKGLIKPG
KLPGVITNPGSPATGHQWAYLPDVAETIAALLERREELEPFARFHMQGHWDADGSEMVSA
IQRTAARFGGVAKIRSFPWWFMSLAAPFNATLRELLEMRYLWRQSVRLDNTKLVNFLGAE
PHTPLDVAVHTTLQGLGCIDNTEMSRITV