Protein Info for BWI76_RS12975 in Klebsiella michiganensis M5al
Annotation: type I glyceraldehyde-3-phosphate dehydrogenase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 61% identical to G3P_GEOSE: Glyceraldehyde-3-phosphate dehydrogenase (gap) from Geobacillus stearothermophilus
KEGG orthology group: K00134, glyceraldehyde 3-phosphate dehydrogenase [EC: 1.2.1.12] (inferred from 94% identity to kpe:KPK_2662)MetaCyc: 54% identical to Gap (Thermotoga maritima)
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating). [EC: 1.2.1.12]
Predicted SEED Role
"NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)" in subsystem Calvin-Benson cycle or Entner-Doudoroff Pathway or Glycolysis and Gluconeogenesis or Pyridoxin (Vitamin B6) Biosynthesis or Redox-dependent regulation of nucleus processes (EC 1.2.1.12)
MetaCyc Pathways
- superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass (25/26 steps found)
- superpathway of N-acetylneuraminate degradation (22/22 steps found)
- hexitol fermentation to lactate, formate, ethanol and acetate (19/19 steps found)
- superpathway of hexitol degradation (bacteria) (18/18 steps found)
- superpathway of glucose and xylose degradation (17/17 steps found)
- superpathway of glycolysis and the Entner-Doudoroff pathway (17/17 steps found)
- superpathway of anaerobic sucrose degradation (18/19 steps found)
- gluconeogenesis I (13/13 steps found)
- glycolysis I (from glucose 6-phosphate) (13/13 steps found)
- homolactic fermentation (12/12 steps found)
- superpathway of pyridoxal 5'-phosphate biosynthesis and salvage (12/12 steps found)
- glycolysis II (from fructose 6-phosphate) (11/11 steps found)
- glycolysis III (from glucose) (11/11 steps found)
- heterolactic fermentation (16/18 steps found)
- Entner-Doudoroff pathway I (9/9 steps found)
- formaldehyde assimilation III (dihydroxyacetone cycle) (11/12 steps found)
- Bifidobacterium shunt (13/15 steps found)
- superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle (18/22 steps found)
- pyridoxal 5'-phosphate biosynthesis I (7/7 steps found)
- glycolysis IV (8/10 steps found)
- sucrose biosynthesis I (from photosynthesis) (7/9 steps found)
- glycerol degradation to butanol (12/16 steps found)
- gluconeogenesis III (9/12 steps found)
- glycolysis VI (from fructose) (8/11 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Glycolysis / Gluconeogenesis
Isozymes
Compare fitness of predicted isozymes for: 1.2.1.12
Use Curated BLAST to search for 1.2.1.12
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A285B310 at UniProt or InterPro
Protein Sequence (336 amino acids)
>BWI76_RS12975 type I glyceraldehyde-3-phosphate dehydrogenase (Klebsiella michiganensis M5al) MVKVGINGFGRIGRNVLRAAQGNPEIQIVAINDLTDSKTLAHLLKYDSLLGKLDADVTAG EGQLVVDGKTITVFSERDPASIPWRQSEVDIVIEATGFFTDRDKAAVHIHSGGARRVIIS APGKNEDLTIVMGVNDGLYSPDKHYVVSNGSCTTNGLAPAAQVLHQHFGIKHGLMNTTHA YTNSQALHDQPEKDLRGARAAALSIVPYSSGAAKALGKVIPELDGRLTGYSLRVPVPVVS IVDLTVTLERDVTAEEVNNAFREAAATGPLKGILGYSDEPLVSSDYRGDPRSSIIDGLST LVIGGNMVKILAWYDNEWGFSNRLVDLSLLMAKREG