Protein Info for BWI76_RS12060 in Klebsiella michiganensis M5al

Annotation: putative exodeoxyribonuclease VIII

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 929 PF06630: Exonuc_VIII" amino acids 4 to 170 (167 residues), 81.6 bits, see alignment E=7.5e-27 PF12684: DUF3799" amino acids 744 to 904 (161 residues), 30.5 bits, see alignment E=3.1e-11

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease VIII (EC 3.1.11.-)" (EC 3.1.11.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.-

Use Curated BLAST to search for 3.1.11.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (929 amino acids)

>BWI76_RS12060 putative exodeoxyribonuclease VIII (Klebsiella michiganensis M5al)
MEYFYLIKATQKSGKADAIIWRSAKSEARAQLQLDVDLEDAEIETGRGKDYLKPIRTDFP
VFNDLPAEGVLDFEWCKRYQLGDDQRTWQVTPGAVADSTTVVEDEIVNGDSDDKFSGDEN
SLYNLAEMPFRIQLLAQYMAEEGHVYHISIPHRGRLSAMELDTDNSAVQDLILAAESIPE
IKKYDMPALWKFTSANKKVFPEGKRHELGKRIQFAKLWFETNAIDRGILTREWSVGNQIS
AVPHADPHATPERYKRAVTQNIANLAIEIAIAQLYPDAEPGKISRPQLIGAKDLVDRKED
VHVKALKIMSKTTDILDYDANSIFGVTRAIKWNGEESTSELRATVRNWLAANGIYENGER
SKGYPEWEEDPRAGRQSNVVEQPNEDPAETKKPEIAKVSAGLYAVEGLMASPAPKNDNKE
ATSDVQMEEAQQVKDEADNPVPAGESANADAEKTDAVNARKILTERCPELAAAVLQDQEP
TITPEDSAEEPDQELTATVWPEYFEPGRYEGVPNEVYHTANGISSTMVKDARVSLMYFEA
RHVSKTINKERSPVLDMGNLVHALALQPEDMDKEFSVEPEIPEGAFTTTATIRAFIDEHN
ASLPPLLSADDIKALLDAHNATLPASFPLGASVDESYASYEQLPEEFQRIENGTKHTATA
MKACIKEYNATLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKEQPLKVSGTKVDLMQVV
KSVNPDAVFSDELLDAWRENPEGKVLVTRQQLSTALAIQKALLNHPTAGKLLTHPSRAVE
VSYFGIDEETGLEIRVRPDLEIDMGGLRIGADLKTISMWNIKQEGLRAKLHREIIERDYH
LSAAMYCETAALDQFFWIFVNKDENYHWIAIIEASEELLELGMLEYRKAMRAIANGFDTG
EWPAPITEDYAEELNDFDVRRLEALRVQA