Protein Info for BWI76_RS09385 in Klebsiella michiganensis M5al

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 875 transmembrane" amino acids 545 to 571 (27 residues), see Phobius details amino acids 575 to 602 (28 residues), see Phobius details amino acids 605 to 609 (5 residues), see Phobius details amino acids 612 to 634 (23 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 200 to 554 (355 residues), 174 bits, see alignment E=2.2e-55 PF10145: PhageMin_Tail" amino acids 243 to 448 (206 residues), 88.4 bits, see alignment E=3.1e-29

Best Hits

KEGG orthology group: None (inferred from 90% identity to sea:SeAg_B4790)

Predicted SEED Role

"corresponds to STY4603 from Accession AL513382: Salmonella typhi CT18"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (875 amino acids)

>BWI76_RS09385 phage tail tape measure protein (Klebsiella michiganensis M5al)
MSDKNLRLQVVLNAVDKLTRPLKVAQAGSKELASAVRQTREQLKRLNDAGGQLKSFDQLS
QSLSRTSNELDQARLRAQMMTREMSALESPTKKQTAALETQWRAVSRLEQKQQQETRQMA
AARAELYRLGISAGGGARETARITRETDRYNKQLAEQERRLRDVGERQRKLNTVRAKADK
MRDVRNSLAGNGAGMMAAGVTTGATLLAPIRAYSESENAANQLAGSMMGPGGKVAAEFLQ
LNKLAIALGDRLPGTTADFQNMMTMLRRQGMSAQVILGGLGESAAYLGVQLQMAPTDAAE
FAAKLQDATQTTEKDMMSLMDVIQRGYYAGVDPGNMLQGFANISSAMEIIKQRGLDAAKT
FSPLLVMADQAGMAGESAGNAYRKIFQATLDAKKIKSVNDELKGKGIKFDFSDGKGGFGG
LEKMYAQLDKLEKLNPETKLATMKALFGNDNEVLKALSIMTTKGIEGYRETVAKLENQAT
LRERVEASLNTLGNKWEAAGGSFTNAMASIGETVAPVLKNIADWLGNLASALDSFVKRHP
QLTAALFKIAAVFAVVATAAGVLSLALASILGPMAVVRVSAGVLGIKFASAFGLIKQVIG
GAGQAILWLGRLMMANPILAIIGLIAMGAIYIWQNWETLGPKFKAMWDAISSGVSRVWAV
IKQTISSKWDEILSDVAALPAKFKAVGGAIIDGILSGINEKWETLKSKLASVKSYLPDWM
TGGDKSPGAPQQKGAGGFFAGMYDSGGYIPRGQVGIAGENGPELINGPAYVTSRRRTAAL
ASVVAGMMGGATPAEAAPLHPMSLPAASYRPAAEKPPGTRPVFQFETQAQIIIQALPGQS
PQDIAREVARQLDERERRMRAKARSNFSDQGGYDS