Protein Info for BWI76_RS09270 in Klebsiella michiganensis M5al
Annotation: capsid scaffold-like protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 44% identical to SCAF_BPP2: Capsid assembly scaffolding protein (O) from Escherichia phage P2
KEGG orthology group: None (inferred from 79% identity to stm:STM2721)Predicted SEED Role
"Phage capsid scaffolding protein" in subsystem Phage capsid proteins
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (277 amino acids)
>BWI76_RS09270 capsid scaffold-like protein (Klebsiella michiganensis M5al) MAVKAKRFRIGVEGATTDGRTIERAWLEQMAASYNPQVYTALINLEHIKGYTPDSPFRRF GTVDKLEAEEIADGPLKGKMALYAWISPSDDLVAYTRKLQKLFTSMEVNTSFADTGKAYL VGLAATDDPASLGTEMLQFSASAKSNPLAGRKQSPENLFTAAEETLIEWEEVQDDKPSLF ARVTAMFAKKSQTDDARFSDVHRAVELVATEQQSLSERTDKSLSAQDKRLAALETSLQEQ QTAFAELEQQLQQEDSRKDYRQRAPGGNAPAGTLTNC