Protein Info for BWI76_RS07270 in Klebsiella michiganensis M5al

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF00005: ABC_tran" amino acids 19 to 180 (162 residues), 107.7 bits, see alignment E=7.7e-35 PF12399: BCA_ABC_TP_C" amino acids 229 to 251 (23 residues), 34.3 bits, see alignment (E = 1.5e-12)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 86% identity to cko:CKO_02935)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B0C0 at UniProt or InterPro

Protein Sequence (255 amino acids)

>BWI76_RS07270 ABC transporter ATP-binding protein (Klebsiella michiganensis M5al)
MSLLSVCHMTKRFGGLTAVDNVSLSINQGEIYGLIGPNGAGKTTCFNLITGLYPADSGEF
AIGGEAYFPSNIEKVTAAGIARTFQNVRLFNNMSVLENVMVGRHVRTRNGLWAAISRHKR
ARAEETQTRELAWHLLDYTGISQFAHYRACDLAYGHQRRLEIARALATEPRLLALDEPAA
GMNAAEKMALGELLLRIRDDGKTLLMIEHDVKLVMGICDRLMVLDYGKTLTSGTPDTVRR
DPAVIAAWLGGNIHV