Protein Info for BWI76_RS06895 in Klebsiella michiganensis M5al

Annotation: biopolymer transporter ExbB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 106 to 129 (24 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details PF01618: MotA_ExbB" amino acids 79 to 183 (105 residues), 93.5 bits, see alignment E=4.6e-31

Best Hits

KEGG orthology group: K03561, biopolymer transport protein ExbB (inferred from 76% identity to srs:SerAS12_0542)

Predicted SEED Role

"Ferric siderophore transport system, biopolymer transport protein ExbB" in subsystem Campylobacter Iron Metabolism or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285AZV6 at UniProt or InterPro

Protein Sequence (215 amino acids)

>BWI76_RS06895 biopolymer transporter ExbB (Klebsiella michiganensis M5al)
MDANLIHDIIFYVMYAALAIAVVILVERGLYFSWAQRQALRFEKALTPDVRRASDLPESL
TGRSSLPLTLILPVLEKKQTAEDREAMSDLIDAQYLLSKPQMSRGLWMLETVVTAAPLLG
LLGTILGIMDTFKALSASGVSDASMVSAGMGTALYATGLGIAIALLCLVGNNYLQSRMER
INELLKVLLIRAGSPVSRPEQGGKRWEGHEAQRYA