Protein Info for BWI76_RS05670 in Klebsiella michiganensis M5al

Annotation: porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF04966: OprB" amino acids 72 to 446 (375 residues), 338.7 bits, see alignment E=2.9e-105

Best Hits

Swiss-Prot: 48% identical to PORB_PSEAE: Porin B (oprB) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K07267, porin (inferred from 90% identity to cro:ROD_03491)

Predicted SEED Role

"Carbohydrate-selective porin OprB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285AZ83 at UniProt or InterPro

Protein Sequence (446 amino acids)

>BWI76_RS05670 porin (Klebsiella michiganensis M5al)
MNTLIKSGMMLLAFLYPLLALANDTLFSPTAKNMTGEWGGVRTDLRQHGYDFTLEYSAMT
ATNISGGYDRDKTLRYSDQYILGVDMDLEKILGIRDGEFKASVNNRNGRDLTQDRLQDPR
APVIGSGVQSNYGRGQTWHATQFWFKKSGWEKKLDIKVGLMPPGEDFDNNGCFFQNLSLC
GSLAGHGSGVWYNTPIGQWGGRVKYSPTPALYVQAGAFQYNPNYATRHGSFELDGTGHLG
YMYLFELGYSPTLGAAKLPGIWKLGGWYNTAEANDVLDDDNGDPYVLTHQAARRHDGRYG
GYLYISQQITHSSSHQQNGLNLFAHLAMNDKDTATMDYQMQAGAIYKGPFASRPQDFISF
GVSKMHANDRVARRAQLLNQMRGIEDYDNPLYVPVRKAEYAAELHYSFRVTPWLTVRPNL
QLLAHPGGSEEIKNAWVIGNQVTVKF